Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs147649800 chr3:97030661 C/CAA 1.61E-8 401 14.2 19.73 3.25 KM Plot
STAD rs148640143 chr4:53670699 A/G 3.02E-6 401 14.07 18.4 6.17 KM Plot
STAD rs150026698 chr1:197083159 T/TAGTGTCTACTAA 1.26E-7 404 4.02 17.05 14.13 KM Plot
STAD rs150372279 chr1:227254113 C/CA 0 405 14.23 14.65 1.48 KM Plot
STAD rs1513600 chr1:227284165 A/G 0 406 14.32 14.15 1.48 KM Plot
STAD rs1513602 chr1:227392568 T/C 0 405 14.27 14.45 1.48 KM Plot
STAD rs1546557 chr1:227454727 G/A 0 404 14.25 14.45 1.48 KM Plot
STAD rs1576879 chr1:196992318 C/G 1.01E-7 404 5.8 16.67 14.13 KM Plot
STAD rs1606549 chr1:227436880 G/A 0 404 14.27 14.23 1.48 KM Plot
STAD rs161080 chr5:2308737 G/T 2.01E-5 403 14.27 14.98 8.87 KM Plot
STAD rs161081 chr5:2308561 A/G 2.01E-5 403 14.27 14.98 8.87 KM Plot
STAD rs16827064 chr1:40688132 C/T 5.72E-9 398 14.77 12.62 3.13 KM Plot
STAD rs16827106 chr1:40735472 A/G 8.55E-9 391 14.93 12.6 3.13 KM Plot
STAD rs16827109 chr1:40735817 T/G 8.55E-9 391 14.93 12.6 3.13 KM Plot
STAD rs16846908 chr1:227250809 T/C 0 406 14.27 14.23 1.48 KM Plot